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LOC118400016 cytokine-inducible SH2-containing protein-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118400016, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118400016
Gene description
cytokine-inducible SH2-containing protein-like
See related
EnsemblRapid:ENSOKEG00005043186
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118400016 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 21 NC_068441.1 (6918503..6922651, complement)

Chromosome 21 - NC_068441.1Genomic Context describing neighboring genes Neighboring gene ras association domain-containing protein 1-like Neighboring gene zinc finger, MYND-type containing 10 Neighboring gene twinfilin-2-like Neighboring gene WD repeat-containing protein 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068441.1 Chromosome 21 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068441.1 Reference Oket_V2 Primary Assembly

    Range
    6918503..6922651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035796345.2 → XP_035652238.1  cytokine-inducible SH2-containing protein-like isoform X2

    Conserved Domains (2) summary
    smart00969
    Location:166 → 199
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:35 → 122
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

  2. XM_052473273.1 → XP_052329233.1  cytokine-inducible SH2-containing protein-like isoform X2

  3. XM_035796343.2 → XP_035652236.1  cytokine-inducible SH2-containing protein-like isoform X1

    Related
    ENSOKEP00005075992.1, ENSOKET00005091272.1
    Conserved Domains (2) summary
    smart00969
    Location:188 → 221
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:57 → 144
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

  4. XM_035796344.2 → XP_035652237.1  cytokine-inducible SH2-containing protein-like isoform X2

    Conserved Domains (2) summary
    smart00969
    Location:166 → 199
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:35 → 122
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)
Nucleotide Protein Strain
Heading Accession and Version

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