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LOC118399525 gamma-sarcoglycan-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118399525, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118399525
Gene description
gamma-sarcoglycan-like
See related
EnsemblRapid:ENSOKEG00005020617
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118399525 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 1 NC_068421.1 (25267609..25286514)

Chromosome 1 - NC_068421.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S25-like Neighboring gene trafficking protein particle complex subunit 4 Neighboring gene sacsin molecular chaperone Neighboring gene tumor necrosis factor receptor superfamily member 19-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068421.1 Chromosome 1 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068421.1 Reference Oket_V2 Primary Assembly

    Range
    25267609..25286514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035795713.2 → XP_035651606.1  gamma-sarcoglycan-like isoform X1

    Related
    ENSOKEP00005034367.1, ENSOKET00005040718.1
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 281
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_035795793.2 → XP_035651686.1  gamma-sarcoglycan-like isoform X2

    Related
    ENSOKEP00005034359.1, ENSOKET00005040710.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases