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tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118395957, updated on 20-Mar-2024

Summary

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Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
EnsemblRapid:ENSOKEG00005053800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See tmtc3 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 17 NC_068437.1 (47418665..47545720, complement)

Chromosome 17 - NC_068437.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 2 Neighboring gene uncharacterized LOC118396188 Neighboring gene kit ligand a Neighboring gene uncharacterized LOC127908319 Neighboring gene centrosomal protein 290 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068437.1 Chromosome 17 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068437.1 Reference Oket_V2 Primary Assembly

    Range
    47418665..47545720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035790064.2 → XP_035645957.1  protein O-mannosyl-transferase TMTC3

    Related
    ENSOKEP00005099499.1, ENSOKET00005119038.1
    Conserved Domains (3) summary
    TIGR02917
    Location:443 → 802
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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