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LOC118395247 kin of IRRE-like protein 1 [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118395247, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118395247
Gene description
kin of IRRE-like protein 1
See related
EnsemblRapid:ENSOKEG00005026215
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118395247 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 15 NC_068435.1 (41119599..41223948)

Chromosome 15 - NC_068435.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene cell adhesion molecule 3 Neighboring gene uncharacterized LOC127907660 Neighboring gene uncharacterized LOC127907694 Neighboring gene ATP-sensitive inward rectifier potassium channel 10-like Neighboring gene uncharacterized LOC118394964 Neighboring gene zinc finger protein 420-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068435.1 Chromosome 15 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068435.1 Reference Oket_V2 Primary Assembly

    Range
    41119599..41223948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052464119.1 → XP_052320079.1  kin of IRRE-like protein 1 isoform X1

  2. XM_052464121.1 → XP_052320081.1  kin of IRRE-like protein 1 isoform X3

    Related
    ENSOKEP00005044502.1, ENSOKET00005053930.1

  3. XM_052464120.1 → XP_052320080.1  kin of IRRE-like protein 1 isoform X2

    Related
    ENSOKEP00005044733.1, ENSOKET00005054304.1

RNA

  1. XR_008065411.1 RNA Sequence

  2. XR_008065410.1 RNA Sequence

  3. XR_008065406.1 RNA Sequence

  4. XR_004827853.2 RNA Sequence

  5. XR_008065405.1 RNA Sequence

  6. XR_008065409.1 RNA Sequence

  7. XR_008065407.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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