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LOC118388370 host cell factor 1 [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118388370, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118388370
Gene description
host cell factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
hcfc1a
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Genomic context

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See LOC118388370 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 10 NC_068430.1 (21569930..21585359)

Chromosome 10 - NC_068430.1Genomic Context describing neighboring genes Neighboring gene red-sensitive opsin-2-like Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene erythroid transcription factor Neighboring gene bcl-2-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068430.1 Chromosome 10 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
host cell factor C1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068430.1 Reference Oket_V2 Primary Assembly

    Range
    21569930..21585359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035777359.2 → XP_035633252.1  host cell factor 1 isoform X2

    Conserved Domains (4) summary
    PLN02153
    Location:15 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1432 → 1461
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    cl21522
    Location:1468 → 1570
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_035777360.2 → XP_035633253.1  host cell factor 1 isoform X3

    Conserved Domains (4) summary
    PLN02153
    Location:15 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1431 → 1460
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    cl21522
    Location:1467 → 1569
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_035777356.2 → XP_035633249.1  host cell factor 1 isoform X1

    Conserved Domains (4) summary
    PLN02153
    Location:15 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1477 → 1506
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    cl21522
    Location:1513 → 1615
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  4. XM_035777362.2 → XP_035633255.1  host cell factor 1 isoform X4

    Conserved Domains (4) summary
    PLN02153
    Location:15 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1396 → 1425
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    cl21522
    Location:1432 → 1534
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein Strain
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