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LOC118385484 TNF receptor-associated factor 2-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118385484, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118385484
Gene description
TNF receptor-associated factor 2-like
See related
EnsemblRapid:ENSOKEG00005018402
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118385484 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 6 NC_068426.1 (37212874..37230350)

Chromosome 6 - NC_068426.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118385483 Neighboring gene ankyrin repeat domain-containing protein 34B-like Neighboring gene tenascin-like Neighboring gene phosphatidylinositol 3-kinase regulatory subunit alpha-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068426.1 Chromosome 6 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068426.1 Reference Oket_V2 Primary Assembly

    Range
    37212874..37230350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035772655.2 → XP_035628548.1  TNF receptor-associated factor 2-like

    Conserved Domains (5) summary
    TIGR00599
    Location:34 → 157
    rad18; DNA repair protein rad18
    cd16639
    Location:32 → 73
    RING-HC_TRAF2; RING finger, HC subclass, found in tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and similar proteins
    cl02446
    Location:430 → 591
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:363 → 423
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl40617
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger

  2. XM_035772653.1 → XP_035628546.1  TNF receptor-associated factor 2-like

    Conserved Domains (5) summary
    TIGR00599
    Location:34 → 157
    rad18; DNA repair protein rad18
    cd16639
    Location:32 → 73
    RING-HC_TRAF2; RING finger, HC subclass, found in tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and similar proteins
    cl02446
    Location:430 → 591
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:363 → 423
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl40617
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger

  3. XM_035772654.2 → XP_035628547.1  TNF receptor-associated factor 2-like

    Related
    ENSOKEP00005030724.1, ENSOKET00005036370.1
    Conserved Domains (5) summary
    TIGR00599
    Location:34 → 157
    rad18; DNA repair protein rad18
    cd16639
    Location:32 → 73
    RING-HC_TRAF2; RING finger, HC subclass, found in tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and similar proteins
    cl02446
    Location:430 → 591
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:363 → 423
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl40617
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger

  4. XM_035772656.2 → XP_035628549.1  TNF receptor-associated factor 2-like

    Conserved Domains (5) summary
    TIGR00599
    Location:34 → 157
    rad18; DNA repair protein rad18
    cd16639
    Location:32 → 73
    RING-HC_TRAF2; RING finger, HC subclass, found in tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and similar proteins
    cl02446
    Location:430 → 591
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    pfam16673
    Location:363 → 423
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl40617
    Location:178 → 235
    zf-TRAF; TRAF-type zinc finger
Nucleotide Protein Strain
Heading Accession and Version

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