U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC118371398 laminin subunit alpha-1-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118371398, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC118371398
Gene description
laminin subunit alpha-1-like
See related
EnsemblRapid:ENSOKEG00005012329
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC118371398 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
67
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 28 NC_068448.1 (71952825..72037174)

Chromosome 28 - NC_068448.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase mu-like Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene leucine-rich repeat-containing protein 30-like Neighboring gene rho GTPase-activating protein 18-like Neighboring gene uncharacterized LOC127912889 Neighboring gene lethal(3)malignant brain tumor-like protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_068448.1 Chromosome 28 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in camera-type eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
laminin subunit alpha-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068448.1 Reference Oket_V2 Primary Assembly

    Range
    71952825..72037174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052483801.1 → XP_052339761.1  laminin subunit alpha-1-like isoform X5

    Related
    ENSOKEP00005021166.1, ENSOKET00005024446.1

  2. XM_052483791.1 → XP_052339751.1  laminin subunit alpha-1-like isoform X2

  3. XM_052483798.1 → XP_052339758.1  laminin subunit alpha-1-like isoform X2

  4. XM_052483794.1 → XP_052339754.1  laminin subunit alpha-1-like isoform X4

  5. XM_052483796.1 → XP_052339756.1  laminin subunit alpha-1-like isoform X4

  6. XM_052483799.1 → XP_052339759.1  laminin subunit alpha-1-like isoform X4

  7. XM_052483790.1 → XP_052339750.1  laminin subunit alpha-1-like isoform X1

  8. XM_052483792.1 → XP_052339752.1  laminin subunit alpha-1-like isoform X1

  9. XM_052483797.1 → XP_052339757.1  laminin subunit alpha-1-like isoform X1

  10. XM_052483793.1 → XP_052339753.1  laminin subunit alpha-1-like isoform X3

  11. XM_052483795.1 → XP_052339755.1  laminin subunit alpha-1-like isoform X3

RNA

  1. XR_008083920.1 RNA Sequence

  2. XR_008083930.1 RNA Sequence

  3. XR_008083929.1 RNA Sequence

  4. XR_008083924.1 RNA Sequence

  5. XR_008083945.1 RNA Sequence

  6. XR_008083939.1 RNA Sequence

  7. XR_008083944.1 RNA Sequence

  8. XR_008083923.1 RNA Sequence

  9. XR_008083922.1 RNA Sequence

  10. XR_008083927.1 RNA Sequence

  11. XR_008083926.1 RNA Sequence

  12. XR_008083938.1 RNA Sequence

  13. XR_008083940.1 RNA Sequence

  14. XR_008083931.1 RNA Sequence

  15. XR_008083948.1 RNA Sequence

  16. XR_008083949.1 RNA Sequence

  17. XR_008083954.1 RNA Sequence

  18. XR_008083953.1 RNA Sequence

  19. XR_008083950.1 RNA Sequence

  20. XR_008083955.1 RNA Sequence

  21. XR_008083946.1 RNA Sequence

  22. XR_008083952.1 RNA Sequence

  23. XR_008083958.1 RNA Sequence

  24. XR_008083943.1 RNA Sequence

  25. XR_008083951.1 RNA Sequence

  26. XR_008083957.1 RNA Sequence

  27. XR_008083956.1 RNA Sequence

  28. XR_008083933.1 RNA Sequence

  29. XR_008083935.1 RNA Sequence

  30. XR_008083947.1 RNA Sequence

  31. XR_008083925.1 RNA Sequence

  32. XR_008083928.1 RNA Sequence

  33. XR_008083921.1 RNA Sequence

  34. XR_008083942.1 RNA Sequence

  35. XR_008083937.1 RNA Sequence

  36. XR_008083936.1 RNA Sequence

  37. XR_008083941.1 RNA Sequence

  38. XR_008083932.1 RNA Sequence

  39. XR_008083934.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases