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LOC118369680 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118369680, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118369680
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like
See related
EnsemblRapid:ENSOKEG00005023172
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118369680 in Genome Data Viewer
Location:
chromosome: 36
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 36 NC_068456.1 (13604910..13785643)

Chromosome 36 - NC_068456.1Genomic Context describing neighboring genes Neighboring gene neurotrypsin-like Neighboring gene zinc finger, SWIM-type containing 8 Neighboring gene uncharacterized LOC127916465 Neighboring gene calcium/calmodulin-dependent protein kinase type II subunit gamma Neighboring gene uncharacterized LOC127916506 Neighboring gene uncharacterized LOC127916507

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068456.1 Chromosome 36 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068456.1 Reference Oket_V2 Primary Assembly

    Range
    13604910..13785643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035754274.2 → XP_035610167.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_035754272.2 → XP_035610165.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_035754276.2 → XP_035610169.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_035754277.2 → XP_035610170.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_035754275.2 → XP_035610168.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  6. XM_035754278.2 → XP_035610171.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

    Related
    ENSOKEP00005038209.1, ENSOKET00005045763.1
    Conserved Domains (2) summary
    pfam00685
    Location:609 → 860
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:27 → 520
    HSNSD; heparan sulfate-N-deacetylase

  7. XM_052498531.1 → XP_052354491.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like

Nucleotide Protein Strain
Heading Accession and Version

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