U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC118361765 aspartyl/asparaginyl beta-hydroxylase-like [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118361765, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC118361765
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC118361765 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 28 NC_068448.1 (70878297..70932001, complement)

Chromosome 28 - NC_068448.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase RIO3-like Neighboring gene CMRF35-like molecule 3 Neighboring gene clavesin-1-like Neighboring gene WD repeat-containing protein 48-like Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene uncharacterized LOC118361770

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_068448.1 Chromosome 28 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068448.1 Reference Oket_V2 Primary Assembly

    Range
    70878297..70932001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035741966.2 → XP_035597859.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 283
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:311 → 523
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:396 → 422
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:565 → 719
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_035741963.1 → XP_035597856.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 292
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:320 → 532
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:405 → 431
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:574 → 728
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_035741972.2 → XP_035597865.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X10

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 266
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:287 → 499
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:372 → 398
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:541 → 695
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_035741967.2 → XP_035597860.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 276
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:304 → 516
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:389 → 415
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:558 → 712
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_035741969.2 → XP_035597862.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 281
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:302 → 514
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:387 → 413
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:556 → 710
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_035741964.2 → XP_035597857.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 291
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:319 → 531
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:404 → 430
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:573 → 727
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_035741975.2 → XP_035597868.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X13

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 297
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:266 → 478
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:351 → 377
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:520 → 674
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_035741974.2 → XP_035597867.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X12

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 259
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:280 → 492
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:365 → 391
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:534 → 688
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_035741971.2 → XP_035597864.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X9

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 273
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:294 → 506
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:379 → 405
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:548 → 702
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  10. XM_035741968.2 → XP_035597861.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 282
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:303 → 515
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:388 → 414
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:557 → 711
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  11. XM_035741973.2 → XP_035597866.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X11

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 262
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:283 → 495
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:368 → 394
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:537 → 691
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  12. XM_035741970.2 → XP_035597863.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X8

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 276
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:297 → 509
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:382 → 408
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:551 → 705
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  13. XM_035741965.2 → XP_035597858.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:37 → 285
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:313 → 525
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:398 → 424
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:567 → 721
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.