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LOC118358510 VIP36-like protein [ Oncorhynchus keta (chum salmon) ]

Gene ID: 118358510, updated on 19-Jun-2024

Summary

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Gene symbol
LOC118358510
Gene description
VIP36-like protein
See related
EnsemblRapid:ENSOKEG00005053081
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus keta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC118358510 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Oket_V2 (GCF_023373465.1) 25 NC_068445.1 (29885961..29891081)

Chromosome 25 - NC_068445.1Genomic Context describing neighboring genes Neighboring gene TM2 domain-containing protein 2-like Neighboring gene T-box transcription factor TBX3-like Neighboring gene leukocyte surface antigen CD53-like Neighboring gene serine/threonine-protein kinase A-Raf-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068445.1 Chromosome 25 Reference Oket_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023373465.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oket_V2 Primary Assembly

Genomic

  1. NC_068445.1 Reference Oket_V2 Primary Assembly

    Range
    29885961..29891081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052479079.1 → XP_052335039.1  VIP36-like protein isoform X2

  2. XM_035736423.2 → XP_035592316.1  VIP36-like protein isoform X1

    Related
    ENSOKEP00005098342.1, ENSOKET00005117329.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 303
    lectin_L-type; legume lectins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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