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rnf17 ring finger protein 17 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118338761, updated on 20-Mar-2024

Summary

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Gene symbol
rnf17
Gene description
ring finger protein 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
human zebrafish all
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Genomic context

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See rnf17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023340095.1 (21710872..21736176)

NW_023340095.1Genomic Context describing neighboring genes Neighboring gene troponin T, slow skeletal muscle-like Neighboring gene uncharacterized LOC118339208 Neighboring gene centromere protein J Neighboring gene transcription termination factor, RNA polymerase II

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023340095 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RING finger protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023340095.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    21710872..21736176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035676073.1 → XP_035531966.1  RING finger protein 17 isoform X1

    Conserved Domains (5) summary
    TIGR02169
    Location:73 → 251
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd00162
    Location:12 → 60
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam00567
    Location:910 → 1021
    TUDOR; Tudor domain
    cl02573
    Location:1451 → 1555
    Tudor_SF; Tudor domain superfamily
    cl17238
    Location:12 → 60
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_035676074.1 → XP_035531967.1  RING finger protein 17 isoform X2

    Conserved Domains (5) summary
    TIGR02169
    Location:73 → 251
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd00162
    Location:12 → 60
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    pfam00567
    Location:909 → 1020
    TUDOR; Tudor domain
    cl02573
    Location:1450 → 1554
    Tudor_SF; Tudor domain superfamily
    cl17238
    Location:12 → 60
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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