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kif13a kinesin family member 13A [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118335594, updated on 20-Mar-2024

Summary

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Gene symbol
kif13a
Gene description
kinesin family member 13A
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
human zebrafish all
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Genomic context

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See kif13a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339807.1 (13522891..13568347, complement)

NW_023339807.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1b (glutamate binding) Neighboring gene RNA binding motif protein 24b Neighboring gene E3 ubiquitin-protein ligase NHLRC1-like Neighboring gene phosphatidylserine synthase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339807 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kinesin-like protein KIF13A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339807.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    13522891..13568347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035671963.1 → XP_035527856.1  kinesin-like protein KIF13A isoform X6

    Conserved Domains (8) summary
    cd00060
    Location:446 → 543
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:546 → 765
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 359
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1860 → 1922
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:753 → 798
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1220 → 1284
    DUF3694; Kinesin protein
    pfam16183
    Location:356 → 468
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1107 → 1151
    DUF3585; Protein of unknown function (DUF3585)

  2. XM_035671959.1 → XP_035527852.1  kinesin-like protein KIF13A isoform X2

    Conserved Domains (8) summary
    cd00060
    Location:446 → 543
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:546 → 765
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 359
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1915 → 1977
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:753 → 798
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1220 → 1284
    DUF3694; Kinesin protein
    pfam16183
    Location:356 → 468
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1107 → 1151
    DUF3585; Protein of unknown function (DUF3585)

  3. XM_035671960.1 → XP_035527853.1  kinesin-like protein KIF13A isoform X3

    Conserved Domains (8) summary
    cd00060
    Location:447 → 544
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:547 → 766
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 360
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1913 → 1975
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:754 → 799
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1221 → 1285
    DUF3694; Kinesin protein
    pfam16183
    Location:357 → 469
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1108 → 1152
    DUF3585; Protein of unknown function (DUF3585)

  4. XM_035671958.1 → XP_035527851.1  kinesin-like protein KIF13A isoform X1

    Conserved Domains (8) summary
    cd00060
    Location:447 → 544
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:547 → 766
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 360
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1916 → 1978
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:754 → 799
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1221 → 1285
    DUF3694; Kinesin protein
    pfam16183
    Location:357 → 469
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1108 → 1152
    DUF3585; Protein of unknown function (DUF3585)

  5. XM_035671962.1 → XP_035527855.1  kinesin-like protein KIF13A isoform X5

    Conserved Domains (8) summary
    cd00060
    Location:447 → 544
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:547 → 766
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 360
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1861 → 1923
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:754 → 799
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1221 → 1285
    DUF3694; Kinesin protein
    pfam16183
    Location:357 → 469
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1108 → 1152
    DUF3585; Protein of unknown function (DUF3585)

  6. XM_035671961.1 → XP_035527854.1  kinesin-like protein KIF13A isoform X4

    Conserved Domains (8) summary
    cd00060
    Location:447 → 544
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    TIGR02168
    Location:547 → 766
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cd01365
    Location:5 → 360
    KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
    pfam01302
    Location:1862 → 1924
    CAP_GLY; CAP-Gly domain
    pfam12423
    Location:754 → 799
    KIF1B; Kinesin protein 1B
    pfam12473
    Location:1221 → 1285
    DUF3694; Kinesin protein
    pfam16183
    Location:357 → 469
    Kinesin_assoc; Kinesin-associated
    cl23748
    Location:1108 → 1152
    DUF3585; Protein of unknown function (DUF3585)
Nucleotide Protein
Heading Accession and Version

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