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sh2d5 SH2 domain containing 5 [ Morone saxatilis (striped sea-bass) ]

Gene ID: 118328879, updated on 20-Mar-2024

Summary

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Gene symbol
sh2d5
Gene description
SH2 domain containing 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Morone saxatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Moronidae; Morone
Orthologs
human zebrafish all
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Genomic context

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See sh2d5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current NCSU_SB_2.0 (GCF_004916995.1) Unplaced Scaffold NW_023339740.1 (23197197..23202959, complement)

NW_023339740.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118328918 Neighboring gene kinesin family member 17 Neighboring gene heterochromatin protein 1, binding protein 3 Neighboring gene eukaryotic translation initiation factor 4 gamma, 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_023339740 Unplaced Scaffold Reference NCSU_SB_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis). Li C, et al. Anim Genet, 2014 Dec. PMID 25160849
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH2 domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morone saxatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_SB_2.0 Primary Assembly

Genomic

  1. NW_023339740.1 Reference NCSU_SB_2.0 Primary Assembly

    Range
    23197197..23202959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035662805.1 → XP_035518698.1  SH2 domain-containing protein 5

    Conserved Domains (2) summary
    cd00173
    Location:276 → 352
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:11 → 138
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  2. XM_035662804.1 → XP_035518697.1  SH2 domain-containing protein 5

    Conserved Domains (2) summary
    cd00173
    Location:276 → 352
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:11 → 138
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
Heading Accession and Version

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