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LOC118317862 torsin-1A-interacting protein 2 [ Scophthalmus maximus (turbot) ]

Gene ID: 118317862, updated on 23-Oct-2023

Summary

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Gene symbol
LOC118317862
Gene description
torsin-1A-interacting protein 2
See related
EnsemblRapid:ENSSMAG00025024861
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
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Genomic context

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See LOC118317862 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 13 NC_061527.1 (14316180..14320516)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 12 NC_049699.1 (14334777..14339086)

Chromosome 13 - NC_061527.1Genomic Context describing neighboring genes Neighboring gene FYVE and coiled-coil domain autophagy adaptor 1a Neighboring gene chemokine (C motif) receptor 1a, duplicate 1 Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6 Neighboring gene retinoid X receptor, gamma b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061527.1 Reference ASM2237912v1 Primary Assembly

    Range
    14316180..14320516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035646926.2 → XP_035502819.2  torsin-1A-interacting protein 2

    Related
    ENSSMAP00025074405.1, ENSSMAT00025081845.1
Nucleotide Protein Strain
Heading Accession and Version

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