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pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Scophthalmus maximus (turbot) ]

Gene ID: 118317730, updated on 10-Oct-2024

Summary

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Gene symbol
pomgnt1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
EnsemblRapid:ENSSMAG00025020941
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See pomgnt1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
25
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 13 NC_061527.1 (1359748..1441017, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 12 NC_049699.1 (1452224..1536778, complement)

Chromosome 13 - NC_061527.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase, regulatory subunit 3b (gamma) Neighboring gene uncharacterized LOC118317733 Neighboring gene tetraspanin-1 Neighboring gene interferon-induced protein with tetratricopeptide repeats 1-like Neighboring gene phospholipase A2 inhibitor and Ly6/PLAUR domain-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061527.1 Reference ASM2237912v1 Primary Assembly

    Range
    1359748..1441017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035646657.2 → XP_035502550.2  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

    Related
    ENSSMAP00025065924.1, ENSSMAT00025070558.1

  2. XM_035646659.2 → XP_035502552.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D3AZJ8
    Related
    ENSSMAP00025065919.1, ENSSMAT00025070553.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  3. XM_035646660.2 → XP_035502553.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8D3AZB9, A0A8D3AZJ8
    Related
    ENSSMAP00025065915.1, ENSSMAT00025070549.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

  4. XM_035646658.2 → XP_035502551.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U9C350, A0A8D3D662
    Related
    ENSSMAP00025065904.1, ENSSMAT00025070538.1
    Conserved Domains (2) summary
    cd02514
    Location:296 → 623
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:94 → 241
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein Strain
Heading Accession and Version

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