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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Scophthalmus maximus (turbot) ]

Gene ID: 118311726, updated on 20-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
EnsemblRapid:ENSSMAG00025009687
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 1 NC_061515.1 (9893834..9926836, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 1 NC_049688.1 (22243914..22276740)

Chromosome 1 - NC_061515.1Genomic Context describing neighboring genes Neighboring gene amyloid beta (A4) precursor-like protein 1 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene uncharacterized si:dkey-262k9.2 Neighboring gene FXYD domain containing ion transport regulator 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kirre like nephrin family adhesion molecule 3, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061515.1 Reference ASM2237912v1 Primary Assembly

    Range
    9893834..9926836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035635801.2 → XP_035491694.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    UniProtKB/TrEMBL
    A0A8D3DDC8, A0A8D3DYL1
    Conserved Domains (4) summary
    pfam13927
    Location:220 → 289
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  2. XM_035635810.2 → XP_035491703.1  kirre like nephrin family adhesion molecule 3, like isoform X2

    UniProtKB/TrEMBL
    A0A8D3DYL1
    Conserved Domains (4) summary
    pfam13927
    Location:219 → 288
    Ig_3; Immunoglobulin domain
    cd00096
    Location:389 → 393
    Ig; Ig strand A [structural motif]
    cd05759
    Location:119 → 216
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain

  3. XM_035635819.2 → XP_035491712.1  kirre like nephrin family adhesion molecule 3, like isoform X3

    UniProtKB/TrEMBL
    A0A6A4TRA7, A0A8D3DYL1
    Related
    ENSSMAP00025032106.1, ENSSMAT00025033253.1
    Conserved Domains (4) summary
    pfam13927
    Location:220 → 289
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  4. XM_035635793.2 → XP_035491686.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    UniProtKB/TrEMBL
    A0A8D3DDC8, A0A8D3DYL1
    Related
    ENSSMAP00025032104.1, ENSSMAT00025033251.1
    Conserved Domains (4) summary
    pfam13927
    Location:220 → 289
    Ig_3; Immunoglobulin domain
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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