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LOC118309102 zinc finger and SCAN domain-containing protein 22-like [ Scophthalmus maximus (turbot) ]

Gene ID: 118309102, updated on 23-Oct-2023

Summary

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Gene symbol
LOC118309102
Gene description
zinc finger and SCAN domain-containing protein 22-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
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Genomic context

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See LOC118309102 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 6 NC_061520.1 (16403258..16406176)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 6 NC_049693.1 (16296183..16299095)

Chromosome 6 - NC_061520.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD19 Neighboring gene small nucleolar RNA SNORA47 Neighboring gene G protein nucleolar 3 Neighboring gene uncharacterized LOC118310118 Neighboring gene adenosine receptor A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061520.1 Reference ASM2237912v1 Primary Assembly

    Range
    16403258..16406176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035630828.2 → XP_035486721.1  zinc finger and SCAN domain-containing protein 22-like

    Conserved Domains (3) summary
    COG5048
    Location:304 → 357
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:280 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:320 → 345
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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