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ano5b anoctamin 5b [ Scophthalmus maximus (turbot) ]

Gene ID: 118302286, updated on 20-Mar-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
See related
EnsemblRapid:ENSSMAG00025019386
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 4 NC_061518.1 (10501792..10529084, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 5 NC_049692.1 (11160662..11187441, complement)

Chromosome 4 - NC_061518.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2b Neighboring gene solute carrier family 17 member 6b Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Neighboring gene eukaryotic translation initiation factor 3, subunit Jb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061518.1 Reference ASM2237912v1 Primary Assembly

    Range
    10501792..10529084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035628324.2 → XP_035484217.1  anoctamin-5b isoform X3

    UniProtKB/TrEMBL
    A0A8D3C216
    Related
    ENSSMAP00025062053.1, ENSSMAT00025066220.1
    Conserved Domains (2) summary
    pfam04547
    Location:266 → 849
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:46 → 263
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  2. XM_035628322.2 → XP_035484215.1  anoctamin-5b isoform X1

    UniProtKB/TrEMBL
    A0A2U9BC08, A0A8D3BIY3
    Related
    ENSSMAP00025062048.1, ENSSMAT00025066212.1
    Conserved Domains (2) summary
    pfam04547
    Location:294 → 877
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:74 → 291
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

  3. XM_035628323.2 → XP_035484216.1  anoctamin-5b isoform X2

    UniProtKB/TrEMBL
    A0A6A4T6C0, A0A8D3BIY3
    Related
    ENSSMAP00025062037.1, ENSSMAT00025066196.1
    Conserved Domains (2) summary
    pfam04547
    Location:279 → 862
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:59 → 276
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein Strain
Heading Accession and Version

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