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kptn kaptin (actin binding protein) [ Scophthalmus maximus (turbot) ]

Gene ID: 118301400, updated on 20-Mar-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
See related
EnsemblRapid:ENSSMAG00025016855
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 2 NC_061516.1 (6414755..6421880, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 4 NC_049691.1 (21633859..21641086)

Chromosome 2 - NC_061516.1Genomic Context describing neighboring genes Neighboring gene calpain, small subunit 1 a Neighboring gene NOVA alternative splicing regulator 1 Neighboring gene cone-rod homeobox Neighboring gene H3 histone, family 3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061516.1 Reference ASM2237912v1 Primary Assembly

    Range
    6414755..6421880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035626880.2 → XP_035482773.1  KICSTOR complex protein kaptin

    UniProtKB/TrEMBL
    A0A8D3CFY4
    Related
    ENSSMAP00025054606.1, ENSSMAT00025057678.1
Nucleotide Protein Strain
Heading Accession and Version

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