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zcchc10 zinc finger, CCHC domain containing 10 [ Scophthalmus maximus (turbot) ]

Gene ID: 118300536, updated on 20-Mar-2024

Summary

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Gene symbol
zcchc10
Gene description
zinc finger, CCHC domain containing 10
See related
EnsemblRapid:ENSSMAG00025019899
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See zcchc10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 2 NC_061516.1 (19967639..19973603, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 4 NC_049691.1 (8049837..8055791)

Chromosome 2 - NC_061516.1Genomic Context describing neighboring genes Neighboring gene shroom family member 1 Neighboring gene AF4/FMR2 family, member 4 Neighboring gene uncharacterized LOC118300537 Neighboring gene heat shock protein 4a Neighboring gene uncharacterized LOC118300538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061516.1 Reference ASM2237912v1 Primary Assembly

    Range
    19967639..19973603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035625024.2 → XP_035480917.1  zinc finger CCHC domain-containing protein 10 isoform X2

    Conserved Domains (1) summary
    pfam13917
    Location:17 → 49
    zf-CCHC_3; Zinc knuckle

  2. XM_035625023.2 → XP_035480916.1  zinc finger CCHC domain-containing protein 10 isoform X1

    Related
    ENSSMAP00025062427.1, ENSSMAT00025066928.1
    Conserved Domains (1) summary
    pfam13917
    Location:17 → 49
    zf-CCHC_3; Zinc knuckle
Nucleotide Protein Strain
Heading Accession and Version

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