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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Scophthalmus maximus (turbot) ]

Gene ID: 118300178, updated on 20-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSSMAG00025001803
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 2 NC_061516.1 (27400981..27527166, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 4 NC_049691.1 (526656..651336)

Chromosome 2 - NC_061516.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized protein DDB_G0271670-like Neighboring gene uncharacterized protein DDB_G0271670 Neighboring gene uncharacterized LOC124849718 Neighboring gene uncharacterized LOC118301542 Neighboring gene transfer RNA tryptophan (anticodon CCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061516.1 Reference ASM2237912v1 Primary Assembly

    Range
    27400981..27527166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035624362.2 → XP_035480255.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2U9B6Z4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_035624363.2 → XP_035480256.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2U9B6Z4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_035624361.2 → XP_035480254.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2U9B6Z4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_035624360.2 → XP_035480253.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2U9B6Z4, A0A8D3AS74
    Related
    ENSSMAP00025005228.1, ENSSMAT00025005769.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_035624364.2 → XP_035480257.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2U9B6Z4
    Related
    ENSSMAP00025005224.1, ENSSMAT00025005765.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

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