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capn3b calpain 3b [ Scophthalmus maximus (turbot) ]

Gene ID: 118290255, updated on 10-Oct-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSSMAG00025009542
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 18 NC_061532.1 (14255254..14266845, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 20 NC_049707.1 (14236506..14248081, complement)

Chromosome 18 - NC_061532.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 2b Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin Neighboring gene serotriflin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061532.1 Reference ASM2237912v1 Primary Assembly

    Range
    14255254..14266845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047328742.1 → XP_047184698.1  calpain-3b isoform X2

  2. XM_047328747.1 → XP_047184703.1  calpain-3b isoform X6

    Related
    ENSSMAP00025031598.1, ENSSMAT00025032745.1

  3. XM_047328745.1 → XP_047184701.1  calpain-3b isoform X5

    Related
    ENSSMAP00025031942.1, ENSSMAT00025033089.1

  4. XM_047328744.1 → XP_047184700.1  calpain-3b isoform X4

    Related
    ENSSMAP00025031948.1, ENSSMAT00025033095.1

  5. XM_047328743.1 → XP_047184699.1  calpain-3b isoform X3

    Related
    ENSSMAP00025031871.1, ENSSMAT00025033018.1

  6. XM_035617798.2 → XP_035473691.2  calpain-3b isoform X1

    UniProtKB/TrEMBL
    A0A2U9CU83
    Related
    ENSSMAP00025031867.1, ENSSMAT00025033014.1

  7. XM_047328748.1 → XP_047184704.1  calpain-3b isoform X7

Nucleotide Protein Strain
Heading Accession and Version

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