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sgca sarcoglycan, alpha [ Scophthalmus maximus (turbot) ]

Gene ID: 118287313, updated on 20-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSSMAG00025018443
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 16 NC_061530.1 (18549479..18555269, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 18 NC_049705.1 (18995172..19001130, complement)

Chromosome 16 - NC_061530.1Genomic Context describing neighboring genes Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene collagen, type I, alpha 1b Neighboring gene uncharacterized LOC118287343 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene NBR1 autophagy cargo receptor a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061530.1 Reference ASM2237912v1 Primary Assembly

    Range
    18549479..18555269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035612389.2 → XP_035468282.1  alpha-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A2U9CN67
    Related
    ENSSMAP00025059626.1, ENSSMAT00025063172.1
    Conserved Domains (1) summary
    pfam05510
    Location:23 → 345
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_035612387.2 → XP_035468280.1  alpha-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8D3A6V6
    Related
    ENSSMAP00025059627.1, ENSSMAT00025063173.1
    Conserved Domains (1) summary
    pfam05510
    Location:31 → 386
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_035612386.2 → XP_035468279.1  alpha-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8D3A6V6
    Conserved Domains (1) summary
    pfam05510
    Location:31 → 386
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein Strain
Heading Accession and Version

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