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capn3a calpain 3a, (p94) [ Scophthalmus maximus (turbot) ]

Gene ID: 118285806, updated on 6-Jun-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
EnsemblRapid:ENSSMAG00025007092
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 15
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 15 NC_061529.1 (3577501..3588973, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 17 NC_049704.1 (3472195..3483573, complement)

Chromosome 15 - NC_061529.1Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene glucosidase, alpha; neutral C Neighboring gene transmembrane protein 87A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061529.1 Reference ASM2237912v1 Primary Assembly

    Range
    3577501..3588973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047337825.1 → XP_047193781.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A8D3C9G6

  2. XM_035609663.2 → XP_035465556.2  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A8D3CXI6
    Related
    ENSSMAP00025022838.1, ENSSMAT00025023854.1

  3. XM_035609664.2 → XP_035465557.2  calpain-3 isoform X3

    UniProtKB/TrEMBL
    A0A8D3CXI6
    Related
    ENSSMAP00025022853.1, ENSSMAT00025023869.1
Nucleotide Protein Strain
Heading Accession and Version

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