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tlr18 toll-like receptor 18 [ Scophthalmus maximus (turbot) ]

Gene ID: 118285011, updated on 20-Mar-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Also known as
tlr14
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 10 NC_061524.1 (21718706..21738702)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 16 NC_049703.1 (20033723..20049286, complement)

Chromosome 10 - NC_061524.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 4b Neighboring gene uncharacterized LOC118285013 Neighboring gene S100 calcium binding protein A1 Neighboring gene uncharacterized LOC118285531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18
Names
toll-like receptor 14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061524.1 Reference ASM2237912v1 Primary Assembly

    Range
    21718706..21738702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047334997.1 → XP_047190953.1  toll-like receptor 18

Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases