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POMT1 protein O-mannosyltransferase 1 [ Cygnus atratus (black swan) ]

Gene ID: 118252181, updated on 20-Mar-2024

Summary

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Gene symbol
POMT1
Gene description
protein O-mannosyltransferase 1
See related
EnsemblRapid:ENSACYG00000005827
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human mouse all
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Genomic context

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See POMT1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 19 NC_066380.1 (5207558..5222897, complement)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336627.1 (5207558..5222887, complement)

Chromosome 19 - NC_066380.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 1 Neighboring gene proline rich transmembrane protein 1B Neighboring gene uridine-cytidine kinase 1 Neighboring gene small nucleolar RNA SNORD62 Neighboring gene proline rich coiled-coil 2B Neighboring gene phospholipid phosphatase 7 (inactive)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066380.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    5207558..5222897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050714517.1 → XP_050570474.1  protein O-mannosyl-transferase 1 isoform X2

  2. XM_035555162.2 → XP_035411055.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  3. XM_035555159.2 → XP_035411052.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  4. XM_035555160.2 → XP_035411053.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  5. XM_035555163.2 → XP_035411056.1  protein O-mannosyl-transferase 1 isoform X1

    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  6. XM_035555161.2 → XP_035411054.1  protein O-mannosyl-transferase 1 isoform X1

    Related
    ENSACYP00000009534.1
    Conserved Domains (1) summary
    COG1928
    Location:14 → 720
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]

  7. XM_050714516.1 → XP_050570473.1  protein O-mannosyl-transferase 1 isoform X1

  8. XM_050714518.1 → XP_050570475.1  protein O-mannosyl-transferase 1 isoform X2

  9. XM_050714519.1 → XP_050570476.1  protein O-mannosyl-transferase 1 isoform X3

Nucleotide Protein
Heading Accession and Version

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