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HPSE heparanase [ Cygnus atratus (black swan) ]

Gene ID: 118251572, updated on 20-Mar-2024

Summary

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Gene symbol
HPSE
Gene description
heparanase
See related
EnsemblRapid:ENSACYG00000004343
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human mouse all
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Genomic context

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See HPSE in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 4 NC_066365.1 (45106122..45113062)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336587.1 (18941911..18948895)

Chromosome 4 - NC_066365.1Genomic Context describing neighboring genes Neighboring gene abraxas 1, BRCA1 A complex subunit Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene helicase, POLQ like Neighboring gene coenzyme Q2, polyprenyltransferase Neighboring gene placenta-specific gene 8 protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066365.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    45106122..45113062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035553801.2 → XP_035409694.1  heparanase isoform X2

    Related
    ENSACYP00000007186.1
    Conserved Domains (1) summary
    pfam03662
    Location:151 → 351
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

  2. XM_050710582.1 → XP_050566539.1  heparanase isoform X1

  3. XM_050710584.1 → XP_050566541.1  heparanase isoform X4

  4. XM_050710583.1 → XP_050566540.1  heparanase isoform X3

Nucleotide Protein
Heading Accession and Version

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