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LOC118249208 toll-like receptor 2 type-1 [ Cygnus atratus (black swan) ]

Gene ID: 118249208, updated on 23-Nov-2023

Summary

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Gene symbol
LOC118249208
Gene description
toll-like receptor 2 type-1
See related
EnsemblRapid:ENSACYG00000003193
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
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Genomic context

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See LOC118249208 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 4 NC_066365.1 (32150497..32157955, complement)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336587.1 (5968159..5978635, complement)

Chromosome 4 - NC_066365.1Genomic Context describing neighboring genes Neighboring gene secreted frizzled related protein 2 Neighboring gene uncharacterized LOC118249278 Neighboring gene toll like receptor 2 Neighboring gene transmembrane 131 like Neighboring gene meiotic nuclear divisions 1 Neighboring gene uncharacterized LOC118251165

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066365.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    32150497..32157955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035548952.2 → XP_035404845.1  toll-like receptor 2 type-1

    Conserved Domains (6) summary
    smart00255
    Location:649 → 793
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:364 → 545
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 209
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_050710337.1 → XP_050566294.1  toll-like receptor 2 type-1

  3. XM_050710335.1 → XP_050566292.1  toll-like receptor 2 type-1

  4. XM_035548967.2 → XP_035404860.1  toll-like receptor 2 type-1

    Related
    ENSACYP00000005372.1
    Conserved Domains (6) summary
    smart00255
    Location:649 → 793
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:364 → 545
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 209
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  5. XM_035548960.2 → XP_035404853.1  toll-like receptor 2 type-1

    Conserved Domains (6) summary
    smart00255
    Location:649 → 793
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:364 → 545
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 209
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  6. XM_050710338.1 → XP_050566295.1  toll-like receptor 2 type-1

  7. XM_050710336.1 → XP_050566293.1  toll-like receptor 2 type-1

  8. XM_050710339.1 → XP_050566296.1  toll-like receptor 2 type-1

Nucleotide Protein
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