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SDC2 syndecan 2 [ Cygnus atratus (black swan) ]

Gene ID: 118247849, updated on 20-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
EnsemblRapid:ENSACYG00000000405
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 2 NC_066363.1 (136957550..137016954)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336604.1 (8556137..8615540)

Chromosome 2 - NC_066363.1Genomic Context describing neighboring genes Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene phosphatidylserine synthase 1 Neighboring gene uncharacterized LOC118247896 Neighboring gene uncharacterized LOC118247855 Neighboring gene carboxypeptidase Q Neighboring gene metadherin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066363.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    136957550..137016954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035546168.2 → XP_035402061.1  syndecan-2

    Related
    ENSACYP00000000669.1
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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