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CH25H cholesterol 25-hydroxylase [ Cygnus atratus (black swan) ]

Gene ID: 118247800, updated on 20-Mar-2024

Summary

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Gene symbol
CH25H
Gene description
cholesterol 25-hydroxylase
See related
EnsemblRapid:ENSACYG00000005623
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 7 NC_066368.1 (18150245..18154921)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336586.1 (39385705..39404498, complement)

Chromosome 7 - NC_066368.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 12 Neighboring gene interferon-induced protein with tetratricopeptide repeats 5-like Neighboring gene putative lysosomal acid lipase/cholesteryl ester hydrolase Neighboring gene uncharacterized LOC126913363 Neighboring gene Fas cell surface death receptor Neighboring gene actin alpha 2, smooth muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid hydroxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cholesterol 25-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066368.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    18150245..18154921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035546101.2 → XP_035401994.1  cholesterol 25-hydroxylase

    Related
    ENSACYP00000009229.1
    Conserved Domains (1) summary
    pfam04116
    Location:132 → 267
    FA_hydroxylase; Fatty acid hydroxylase superfamily

  2. XM_035546177.2 → XP_035402070.1  cholesterol 25-hydroxylase

    Conserved Domains (1) summary
    pfam04116
    Location:132 → 267
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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