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PNPLA4 patatin like phospholipase domain containing 4 [ Cygnus atratus (black swan) ]

Gene ID: 118245791, updated on 18-Sep-2024

Summary

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Gene symbol
PNPLA4
Gene description
patatin like phospholipase domain containing 4
See related
EnsemblRapid:ENSACYG00000003084
Gene type
protein coding
RefSeq status
MODEL
Organism
Cygnus atratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus
Orthologs
human all
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Genomic context

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See PNPLA4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current CAtr_DNAZoo_HiC_assembly (GCF_013377495.2) 1 NC_066362.1 (132801312..132826942)
100 previous assembly Cygnus_atratus_primary_v1.0 (GCF_013377495.1) Unplaced Scaffold NW_023336595.1 (4341503..4367141, complement)

Chromosome 1 - NC_066362.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118245750 Neighboring gene anosmin 1 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_013377495.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

Genomic

  1. NC_066362.1 Reference CAtr_DNAZoo_HiC_assembly Primary Assembly

    Range
    132801312..132826942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035542268.2 → XP_035398161.1  patatin-like phospholipase domain-containing protein 4 isoform X1

    Related
    ENSACYP00000005174.1
    Conserved Domains (1) summary
    cd07222
    Location:102 → 347
    Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

  2. XM_035542270.2 → XP_035398163.1  patatin-like phospholipase domain-containing protein 4 isoform X2

    Conserved Domains (1) summary
    cd07222
    Location:96 → 336
    Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

  3. XM_035542269.2 → XP_035398162.1  patatin-like phospholipase domain-containing protein 4 isoform X1

    Conserved Domains (1) summary
    cd07222
    Location:102 → 347
    Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

  4. XM_035542271.2 → XP_035398164.1  patatin-like phospholipase domain-containing protein 4 isoform X3

    Conserved Domains (1) summary
    cl11396
    Location:102 → 296
    Patatin_and_cPLA2; Patatins and Phospholipases

  5. XM_050709320.1 → XP_050565277.1  patatin-like phospholipase domain-containing protein 4 isoform X1

Nucleotide Protein
Heading Accession and Version

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