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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Anguilla anguilla (European eel) ]

Gene ID: 118236377, updated on 20-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSAANG00010025394
Gene type
protein coding
RefSeq status
MODEL
Organism
Anguilla anguilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fAngAng1.pri (GCF_013347855.1) 9 NC_049209.1 (1520548..1698025, complement)

Chromosome 9 - NC_049209.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC118235206 Neighboring gene uncharacterized LOC118236378 Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049209.1 Chromosome 9 Reference fAngAng1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAngAng1.pri Primary Assembly

Genomic

  1. NC_049209.1 Reference fAngAng1.pri Primary Assembly

    Range
    1520548..1698025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035434688.1 → XP_035290579.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Related
    ENSAANP00010065879.1, ENSAANT00010068548.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_035434683.1 → XP_035290574.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_035434686.1 → XP_035290577.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_035434687.1 → XP_035290578.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_035434685.1 → XP_035290576.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_035434684.1 → XP_035290575.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A9D3M695
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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