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LOC118229185 calpain-3-like [ Anguilla anguilla (European eel) ]

Gene ID: 118229185, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118229185
Gene description
calpain-3-like
See related
EnsemblRapid:ENSAANG00010018073
Gene type
protein coding
RefSeq status
MODEL
Organism
Anguilla anguilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
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Genomic context

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See LOC118229185 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fAngAng1.pri (GCF_013347855.1) 6 NC_049206.1 (45122042..45141671, complement)

Chromosome 6 - NC_049206.1Genomic Context describing neighboring genes Neighboring gene M1-specific T cell receptor beta chain-like Neighboring gene papilin-like Neighboring gene churchill domain containing 1 Neighboring gene MAP3K12 binding inhibitory protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049206.1 Chromosome 6 Reference fAngAng1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAngAng1.pri Primary Assembly

Genomic

  1. NC_049206.1 Reference fAngAng1.pri Primary Assembly

    Range
    45122042..45141671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035420916.1 → XP_035276807.1  calpain-3-like isoform X1

    UniProtKB/TrEMBL
    A0A9D3MIS7
    Related
    ENSAANP00010045421.1, ENSAANT00010047303.1
    Conserved Domains (5) summary
    cd15897
    Location:642 → 669
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:642 → 809
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:77 → 406
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:427 → 565
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:574 → 640
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_035420917.1 → XP_035276808.1  calpain-3-like isoform X2

    UniProtKB/TrEMBL
    A0A9D3MIS7
    Conserved Domains (5) summary
    cd15897
    Location:554 → 581
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:554 → 721
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:7 → 318
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:339 → 477
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:486 → 552
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
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