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hs2st1b heparan sulfate 2-O-sulfotransferase 1b [ Anguilla anguilla (European eel) ]

Gene ID: 118226438, updated on 20-Mar-2024

Summary

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Gene symbol
hs2st1b
Gene description
heparan sulfate 2-O-sulfotransferase 1b
See related
EnsemblRapid:ENSAANG00010016198
Gene type
protein coding
RefSeq status
MODEL
Organism
Anguilla anguilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
Orthologs
zebrafish all
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Genomic context

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See hs2st1b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fAngAng1.pri (GCF_013347855.1) 4 NC_049204.1 (9363144..9431175)

Chromosome 4 - NC_049204.1Genomic Context describing neighboring genes Neighboring gene claudin-18-like Neighboring gene DAZ interacting zinc finger protein 1-like Neighboring gene LIM domain transcription factor LMO4 Neighboring gene uncharacterized LOC118225586

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049204.1 Chromosome 4 Reference fAngAng1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAngAng1.pri Primary Assembly

Genomic

  1. NC_049204.1 Reference fAngAng1.pri Primary Assembly

    Range
    9363144..9431175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035416046.1 → XP_035271937.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    Conserved Domains (1) summary
    pfam03567
    Location:16 → 267
    Sulfotransfer_2; Sulfotransferase family

  2. XM_035416045.1 → XP_035271936.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A9D3MNV6
    Related
    ENSAANP00010040368.1, ENSAANT00010042035.1
    Conserved Domains (1) summary
    pfam03567
    Location:74 → 325
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases