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LOC118225549 torsin-1A-interacting protein 2-like [ Anguilla anguilla (European eel) ]

Gene ID: 118225549, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118225549
Gene description
torsin-1A-interacting protein 2-like
See related
EnsemblRapid:ENSAANG00010002152
Gene type
protein coding
RefSeq status
MODEL
Organism
Anguilla anguilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
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Genomic context

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See LOC118225549 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
25
Annotation release Status Assembly Chr Location
100 current fAngAng1.pri (GCF_013347855.1) 4 NC_049204.1 (30173593..30190519)

Chromosome 4 - NC_049204.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 6 Neighboring gene olfactomedin-like 2Ba Neighboring gene putative ferric-chelate reductase 1 Neighboring gene putative ferric-chelate reductase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049204.1 Chromosome 4 Reference fAngAng1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAngAng1.pri Primary Assembly

Genomic

  1. NC_049204.1 Reference fAngAng1.pri Primary Assembly

    Range
    30173593..30190519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035414080.1 → XP_035269971.1  torsin-1A-interacting protein 2-like isoform X13

    Conserved Domains (1) summary
    pfam05609
    Location:60 → 517
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_035414077.1 → XP_035269968.1  torsin-1A-interacting protein 2-like isoform X10

    Conserved Domains (2) summary
    PTZ00112
    Location:5 → 212
    PTZ00112; origin recognition complex 1 protein; Provisional
    pfam05609
    Location:157 → 563
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  3. XM_035414076.1 → XP_035269967.1  torsin-1A-interacting protein 2-like isoform X9

    Conserved Domains (1) summary
    pfam05609
    Location:124 → 563
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  4. XM_035414071.1 → XP_035269962.1  torsin-1A-interacting protein 2-like isoform X4

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    pfam05609
    Location:170 → 595
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    NF033609
    Location:2 → 310
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  5. XM_035414075.1 → XP_035269966.1  torsin-1A-interacting protein 2-like isoform X8

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    pfam05609
    Location:322 → 563
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    NF033845
    Location:52 → 287
    MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB

  6. XM_035414070.1 → XP_035269961.1  torsin-1A-interacting protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    COG5271
    Location:21 → 222
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:156 → 595
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  7. XM_035414073.1 → XP_035269964.1  torsin-1A-interacting protein 2-like isoform X6

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    pfam05609
    Location:170 → 577
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    NF033609
    Location:2 → 299
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  8. XM_035414072.1 → XP_035269963.1  torsin-1A-interacting protein 2-like isoform X5

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    PTZ00112
    Location:3 → 226
    PTZ00112; origin recognition complex 1 protein; Provisional
    pfam05609
    Location:138 → 577
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  9. XM_035414068.1 → XP_035269959.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    COG5271
    Location:21 → 236
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:170 → 609
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  10. XM_035414074.1 → XP_035269965.1  torsin-1A-interacting protein 2-like isoform X7

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    pfam05609
    Location:170 → 576
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    NF033609
    Location:24 → 307
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  11. XM_035414069.1 → XP_035269960.1  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A9D3MMF6
    Conserved Domains (2) summary
    COG5271
    Location:21 → 236
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam05609
    Location:170 → 608
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  12. XM_035414079.1 → XP_035269970.1  torsin-1A-interacting protein 2-like isoform X12

    UniProtKB/TrEMBL
    A0A9D3MKU9
    Conserved Domains (1) summary
    pfam05609
    Location:234 → 520
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  13. XM_035414078.1 → XP_035269969.1  torsin-1A-interacting protein 2-like isoform X11

    UniProtKB/TrEMBL
    A0A9D3MKU9
    Related
    ENSAANP00010005086.1, ENSAANT00010005330.1
    Conserved Domains (1) summary
    pfam05609
    Location:235 → 521
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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