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LOC118215674 anoctamin-5-like [ Anguilla anguilla (European eel) ]

Gene ID: 118215674, updated on 22-Oct-2023

Summary

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Gene symbol
LOC118215674
Gene description
anoctamin-5-like
See related
EnsemblRapid:ENSAANG00010012008
Gene type
protein coding
RefSeq status
MODEL
Organism
Anguilla anguilla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
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Genomic context

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See LOC118215674 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fAngAng1.pri (GCF_013347855.1) 16 NC_049216.1 (5150543..5172335)

Chromosome 16 - NC_049216.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118214998 Neighboring gene myosin-2 heavy chain, non muscle-like Neighboring gene myosin-2 heavy chain, non muscle-like Neighboring gene transmembrane protein 208 Neighboring gene solute carrier family 7 member 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049216.1 Chromosome 16 Reference fAngAng1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAngAng1.pri Primary Assembly

Genomic

  1. NC_049216.1 Reference fAngAng1.pri Primary Assembly

    Range
    5150543..5172335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035396616.1 → XP_035252507.1  anoctamin-5-like

    Related
    ENSAANP00010029316.1, ENSAANT00010030565.1
    Conserved Domains (2) summary
    pfam04547
    Location:295 → 883
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:75 → 292
    Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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