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csgalnact1a chondroitin sulfate N-acetylgalactosaminyltransferase 1a [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118125681, updated on 8-May-2024

Summary

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Gene symbol
csgalnact1a
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1a
Locus tag
HST_G00182990
See related
EnsemblRapid:ENSHSTG00010018060
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See csgalnact1a in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 18 NC_061500.1 (13092667..13130673)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 18 NC_048944.1 (13124133..13162164)

Chromosome 18 - NC_061500.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 10 Neighboring gene nucleoredoxin like 2 Neighboring gene uncharacterized LOC118125682 Neighboring gene phospholipid phosphatase 1a Neighboring gene Mtr4 exosome RNA helicase Neighboring gene tigger transposable element-derived protein 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061500.1 Reference HSTE1.2 Primary Assembly

    Range
    13092667..13130673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035184522.2 → XP_035040413.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:188 → 565
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_035184523.2 → XP_035040414.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Conserved Domains (1) summary
    cl11394
    Location:188 → 565
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_035184521.2 → XP_035040412.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    Related
    ENSHSTP00010047779.1, ENSHSTT00010050675.1
    Conserved Domains (1) summary
    cl11394
    Location:188 → 565
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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