U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC118124559 exostosin-1c [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118124559, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC118124559
Gene description
exostosin-1c
Locus tag
HST_G00171420
See related
EnsemblRapid:ENSHSTG00010014658
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC118124559 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 17 NC_061499.1 (5368511..5445659, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 17 NC_048943.1 (4727702..4807735, complement)

Chromosome 17 - NC_061499.1Genomic Context describing neighboring genes Neighboring gene cell wall protein DAN4 Neighboring gene Mediator of RNA polymerase II transcription subunit 30-like Neighboring gene probable thiopurine S-methyltransferase Neighboring gene syndecan 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
exostosin-1c

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061499.1 Reference HSTE1.2 Primary Assembly

    Range
    5368511..5445659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035182531.2 → XP_035038422.1  exostosin-1c

    Related
    ENSHSTP00010037708.1, ENSHSTT00010040227.1
    Conserved Domains (2) summary
    pfam03016
    Location:106 → 391
    Exostosin; Exostosin family
    pfam09258
    Location:475 → 719
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases