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LOC118121798 SHC-transforming protein 4 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118121798, updated on 8-May-2024

Summary

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Gene symbol
LOC118121798
Gene description
SHC-transforming protein 4
Locus tag
HST_G00002720
See related
EnsemblRapid:ENSHSTG00010011822
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC118121798 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 1 NC_061483.1 (7650830..7661739)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 1 NC_048927.1 (7211976..7223231)

Chromosome 1 - NC_061483.1Genomic Context describing neighboring genes Neighboring gene SECIS binding protein 2-like Neighboring gene COP9 signalosome subunit 2 Neighboring gene fibrillin 1 Neighboring gene deoxyuridine triphosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SHC-transforming protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061483.1 Reference HSTE1.2 Primary Assembly

    Range
    7650830..7661739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035178071.2 → XP_035033962.1  SHC-transforming protein 4

    Conserved Domains (2) summary
    cd01209
    Location:184 → 335
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
    cl15255
    Location:458 → 551
    SH2; Src homology 2 (SH2) domain

  2. XM_035178158.2 → XP_035034049.1  SHC-transforming protein 4

    Conserved Domains (2) summary
    cd01209
    Location:184 → 335
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
    cl15255
    Location:458 → 551
    SH2; Src homology 2 (SH2) domain

  3. XM_035177997.2 → XP_035033888.1  SHC-transforming protein 4

    Related
    ENSHSTP00010029233.1, ENSHSTT00010031507.1
    Conserved Domains (2) summary
    cd01209
    Location:184 → 335
    PTB_Shc; Shc-like phosphotyrosine-binding (PTB) domain
    cl15255
    Location:458 → 551
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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