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srfb serum response factor b [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118118918, updated on 8-May-2024

Summary

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Gene symbol
srfb
Gene description
serum response factor b
Locus tag
HST_G00124800
See related
EnsemblRapid:ENSHSTG00010014622
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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See srfb in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 12 NC_061494.1 (7600000..7624565, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 12 NC_048938.1 (7478739..7503294, complement)

Chromosome 12 - NC_061494.1Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1a Neighboring gene FHF complex subunit HOOK interacting protein 2 Neighboring gene protein tyrosine kinase 7b Neighboring gene kinesin light chain 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serum response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serum response factor b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061494.1 Reference HSTE1.2 Primary Assembly

    Range
    7600000..7624565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035172461.2 → XP_035028352.1  serum response factor b isoform X11

    Conserved Domains (2) summary
    COG5068
    Location:184 → 412
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  2. XM_035172452.2 → XP_035028343.1  serum response factor b isoform X3

    Conserved Domains (2) summary
    COG5068
    Location:184 → 367
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  3. XM_035172459.2 → XP_035028350.1  serum response factor b isoform X9

    Conserved Domains (2) summary
    COG5068
    Location:184 → 429
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  4. XM_035172453.2 → XP_035028344.1  serum response factor b isoform X4

    Conserved Domains (2) summary
    COG5068
    Location:184 → 503
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  5. XM_035172457.2 → XP_035028348.1  serum response factor b isoform X8

    Related
    ENSHSTP00010037589.1, ENSHSTT00010040108.1
    Conserved Domains (2) summary
    COG5068
    Location:184 → 430
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  6. XM_035172450.2 → XP_035028341.1  serum response factor b isoform X1

    Conserved Domains (2) summary
    COG5068
    Location:184 → 476
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  7. XM_035172451.2 → XP_035028342.1  serum response factor b isoform X2

    Related
    ENSHSTP00010037585.1, ENSHSTT00010040104.1
    Conserved Domains (2) summary
    COG5068
    Location:184 → 411
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  8. XM_035172455.2 → XP_035028346.1  serum response factor b isoform X7

    Conserved Domains (2) summary
    COG5068
    Location:184 → 476
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  9. XM_035172456.2 → XP_035028347.1  serum response factor b isoform X6

    Conserved Domains (2) summary
    COG5068
    Location:184 → 360
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  10. XM_035172460.2 → XP_035028351.1  serum response factor b isoform X10

    Conserved Domains (2) summary
    COG5068
    Location:184 → 441
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  11. XM_035172454.2 → XP_035028345.1  serum response factor b isoform X5

    Conserved Domains (2) summary
    COG5068
    Location:184 → 466
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00266
    Location:186 → 267
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein
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