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asph aspartate beta-hydroxylase [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118117376, updated on 8-May-2024

Summary

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Gene symbol
asph
Gene description
aspartate beta-hydroxylase
Locus tag
HST_G00112470
See related
EnsemblRapid:ENSHSTG00010002969
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 11 NC_061493.1 (1650170..1676033)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 11 NC_048937.1 (1493657..1519732)

Chromosome 11 - NC_061493.1Genomic Context describing neighboring genes Neighboring gene crystallin, zeta (quinone reductase) Neighboring gene tocopherol (alpha) transfer protein Neighboring gene phospholipid phosphatase related 4a Neighboring gene small nucleolar RNA U3 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061493.1 Reference HSTE1.2 Primary Assembly

    Range
    1650170..1676033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047342020.1 → XP_047197976.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Related
    ENSHSTP00010007689.1, ENSHSTT00010007979.1

  2. XM_047342022.1 → XP_047197978.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Related
    ENSHSTP00010007678.1, ENSHSTT00010007965.1

  3. XM_047342023.1 → XP_047197979.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

  4. XM_047342019.1 → XP_047197975.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Related
    ENSHSTP00010007665.1, ENSHSTT00010007955.1

  5. XM_047342021.1 → XP_047197977.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Related
    ENSHSTP00010007671.1, ENSHSTT00010007961.1
Nucleotide Protein
Heading Accession and Version

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