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LOC118115273 VIP36-like protein [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118115273, updated on 19-Jun-2024

Summary

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Gene symbol
LOC118115273
Gene description
VIP36-like protein
Locus tag
HST_G00092780
See related
EnsemblRapid:ENSHSTG00010016782
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC118115273 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 9 NC_061491.1 (3766375..3777693, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 9 NC_048935.1 (3710597..3721924, complement)

Chromosome 9 - NC_061491.1Genomic Context describing neighboring genes Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor b Neighboring gene leukocyte surface antigen CD53 Neighboring gene T-box transcription factor TBX2 Neighboring gene TM2 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061491.1 Reference HSTE1.2 Primary Assembly

    Range
    3766375..3777693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035166345.2 → XP_035022236.1  VIP36-like protein isoform X2

    Related
    ENSHSTP00010044341.1, ENSHSTT00010046934.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 307
    lectin_L-type; legume lectins

  2. XM_035166344.2 → XP_035022235.1  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:56 → 313
    lectin_L-type; legume lectins

  3. XM_035166343.2 → XP_035022234.1  VIP36-like protein isoform X1

    Related
    ENSHSTP00010044344.1, ENSHSTT00010046937.1
    Conserved Domains (1) summary
    cl14058
    Location:56 → 313
    lectin_L-type; legume lectins

RNA

  1. XR_004697539.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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