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LOC118114347 plectin [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118114347, updated on 8-May-2024

Summary

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Gene symbol
LOC118114347
Gene description
plectin
Locus tag
HST_G00079750
See related
EnsemblRapid:ENSHSTG00010006409
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC118114347 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
41
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 8 NC_061490.1 (3774063..3890845)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 8 NC_048934.1 (3752144..3869227)

Chromosome 8 - NC_061490.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061490.1 Reference HSTE1.2 Primary Assembly

    Range
    3774063..3890845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035164771.2 → XP_035020662.2  plectin isoform X12

  2. XM_035164773.2 → XP_035020664.2  plectin isoform X14

    Related
    ENSHSTP00010017844.1, ENSHSTT00010019973.1

  3. XM_035164775.2 → XP_035020666.2  plectin isoform X16

  4. XM_035164777.2 → XP_035020668.2  plectin isoform X18

  5. XM_035164776.2 → XP_035020667.2  plectin isoform X17

  6. XM_035164779.2 → XP_035020670.2  plectin isoform X20

  7. XM_035164761.2 → XP_035020652.2  plectin isoform X1

  8. XM_035164764.2 → XP_035020655.2  plectin isoform X4

  9. XM_035164763.2 → XP_035020654.2  plectin isoform X3

    Related
    ENSHSTP00010017815.1, ENSHSTT00010019943.1

  10. XM_047340727.1 → XP_047196683.1  plectin isoform X7

  11. XM_035164762.2 → XP_035020653.2  plectin isoform X2

    Related
    ENSHSTP00010017831.1, ENSHSTT00010019959.1

  12. XM_047340726.1 → XP_047196682.1  plectin isoform X6

    Related
    ENSHSTP00010017835.1, ENSHSTT00010019963.1

  13. XM_035164765.2 → XP_035020656.2  plectin isoform X5

  14. XM_035164767.2 → XP_035020658.2  plectin isoform X8

  15. XM_035164768.2 → XP_035020659.2  plectin isoform X9

  16. XM_035164778.2 → XP_035020669.2  plectin isoform X19

  17. XM_035164780.2 → XP_035020671.2  plectin isoform X21

  18. XM_035164769.2 → XP_035020660.2  plectin isoform X10

  19. XM_035164770.2 → XP_035020661.2  plectin isoform X11

  20. XM_035164772.2 → XP_035020663.2  plectin isoform X13

  21. XM_035164774.2 → XP_035020665.2  plectin isoform X15

    Related
    ENSHSTP00010017827.1, ENSHSTT00010019955.1
Nucleotide Protein
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