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tgfb2 transforming growth factor, beta 2 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118113442, updated on 8-May-2024

Summary

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Gene symbol
tgfb2
Gene description
transforming growth factor, beta 2
Locus tag
HST_G00080890
See related
EnsemblRapid:ENSHSTG00010002606
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See tgfb2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 8 NC_061490.1 (8641168..8673987, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 8 NC_048934.1 (8501248..8534182, complement)

Chromosome 8 - NC_061490.1Genomic Context describing neighboring genes Neighboring gene prolactin regulatory element binding Neighboring gene lysophospholipase like 1 Neighboring gene uncharacterized LOC118114334 Neighboring gene ribosomal RNA processing 15 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type II transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type III transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta-2 proprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061490.1 Reference HSTE1.2 Primary Assembly

    Range
    8641168..8673987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035163161.2 → XP_035019052.1  transforming growth factor beta-2 proprotein

    Related
    ENSHSTP00010006607.1, ENSHSTT00010006898.1
    Conserved Domains (2) summary
    cd19385
    Location:316 → 412
    TGF_beta_TGFB2; transforming growth factor beta (TGF-beta) like domain found in transforming growth factor beta-2 (TGF-beta-2) and similar proteins
    pfam00688
    Location:21 → 228
    TGFb_propeptide; TGF-beta propeptide
Nucleotide Protein
Heading Accession and Version

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