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galnt18a UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18a [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118109808, updated on 8-May-2024

Summary

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Gene symbol
galnt18a
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18a
Locus tag
HST_G00054410
See related
EnsemblRapid:ENSHSTG00010002402
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 5 NC_061487.1 (26823327..26916972, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 5 NC_048931.1 (26342773..26437811, complement)

Chromosome 5 - NC_061487.1Genomic Context describing neighboring genes Neighboring gene proteoglycan 4 Neighboring gene uncharacterized LOC118110182 Neighboring gene trithorax group protein osa Neighboring gene solute carrier family 12 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061487.1 Reference HSTE1.2 Primary Assembly

    Range
    26823327..26916972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035157204.2 → XP_035013095.1  polypeptide N-acetylgalactosaminyltransferase 18a isoform X1

    Related
    ENSHSTP00010006128.1, ENSHSTT00010006418.1
    Conserved Domains (2) summary
    cd02510
    Location:167 → 469
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:482 → 610
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_035157205.2 → XP_035013096.1  polypeptide N-acetylgalactosaminyltransferase 18a isoform X2

    Related
    ENSHSTP00010006133.1, ENSHSTT00010006423.1
    Conserved Domains (2) summary
    cd02510
    Location:167 → 469
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:482 → 609
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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