U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chsy1 chondroitin sulfate synthase 1 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118109404, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
chsy1
Gene description
chondroitin sulfate synthase 1
Locus tag
HST_G00008760
See related
EnsemblRapid:ENSHSTG00010008848
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chsy1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 1 NC_061483.1 (29571201..29628739)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 1 NC_048927.1 (29151157..29208866)

Chromosome 1 - NC_061483.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptide A' Neighboring gene selenoprotein S Neighboring gene leucine-rich repeat kinase 1 Neighboring gene aldehyde dehydrogenase 1 family, member A3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061483.1 Reference HSTE1.2 Primary Assembly

    Range
    29571201..29628739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035156513.2 → XP_035012404.1  chondroitin sulfate synthase 1

    Related
    ENSHSTP00010019643.1, ENSHSTT00010021772.1
    Conserved Domains (2) summary
    pfam05679
    Location:235 → 774
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:84 → 305
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.