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galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118106905, updated on 8-May-2024

Summary

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Gene symbol
galnt2
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
Locus tag
HST_G00006250
See related
EnsemblRapid:ENSHSTG00010021193
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 1 NC_061483.1 (18209060..18265271, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 1 NC_048927.1 (17809822..17866217, complement)

Chromosome 1 - NC_061483.1Genomic Context describing neighboring genes Neighboring gene centromere protein F Neighboring gene SET and MYND domain containing 2a Neighboring gene URB2 ribosome biogenesis homolog Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061483.1 Reference HSTE1.2 Primary Assembly

    Range
    18209060..18265271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035155603.2 → XP_035011494.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

    Related
    ENSHSTP00010056548.1, ENSHSTT00010060205.1
    Conserved Domains (2) summary
    cd02510
    Location:126 → 421
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:433 → 559
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_035155602.2 → XP_035011493.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    Related
    ENSHSTP00010056557.1, ENSHSTT00010060221.1
    Conserved Domains (2) summary
    cd02510
    Location:127 → 422
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:434 → 560
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_035155606.2 → XP_035011497.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X4

    Related
    ENSHSTP00010056559.1, ENSHSTT00010060226.1
    Conserved Domains (2) summary
    cd02510
    Location:126 → 421
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:433 → 550
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_035155605.2 → XP_035011496.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

    Related
    ENSHSTP00010056560.1, ENSHSTT00010060230.1
    Conserved Domains (2) summary
    cd02510
    Location:127 → 422
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:434 → 551
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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