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sgcg sarcoglycan, gamma [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118105896, updated on 8-May-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
Locus tag
HST_G00043140
See related
EnsemblRapid:ENSHSTG00010003186
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 4 NC_061486.1 (21637215..21651372, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 4 NC_048930.1 (21250292..21265873, complement)

Chromosome 4 - NC_061486.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily, member 19 Neighboring gene sacsin molecular chaperone Neighboring gene ribosomal protein S25 Neighboring gene trafficking protein particle complex subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061486.1 Reference HSTE1.2 Primary Assembly

    Range
    21637215..21651372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035153909.2 → XP_035009800.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_035153912.2 → XP_035009803.1  gamma-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 239
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_035153911.2 → XP_035009802.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_035153910.2 → XP_035009801.1  gamma-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_035153908.2 → XP_035009799.1  gamma-sarcoglycan isoform X1

    Related
    ENSHSTP00010008251.1, ENSHSTT00010008542.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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