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LOC118104522 cytokine-inducible SH2-containing protein [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118104522, updated on 8-May-2024

Summary

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Gene symbol
LOC118104522
Gene description
cytokine-inducible SH2-containing protein
Locus tag
HST_G00027020
See related
EnsemblRapid:ENSHSTG00010021583
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
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Genomic context

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See LOC118104522 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 3 NC_061485.1 (14810035..14812737)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 3 NC_048929.1 (14380997..14383699)

Chromosome 3 - NC_061485.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 82 Neighboring gene twinfilin-2-like Neighboring gene rho-related GTP-binding protein RhoA-B Neighboring gene transmembrane protein 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061485.1 Reference HSTE1.2 Primary Assembly

    Range
    14810035..14812737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035151458.1 → XP_035007349.1  cytokine-inducible SH2-containing protein

    Conserved Domains (2) summary
    smart00969
    Location:171 → 204
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:43 → 129
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)

  2. XM_035151457.1 → XP_035007348.1  cytokine-inducible SH2-containing protein

    Related
    ENSHSTP00010057122.1, ENSHSTT00010060808.1
    Conserved Domains (2) summary
    smart00969
    Location:171 → 204
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:43 → 129
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)
Nucleotide Protein
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