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mgat5 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [ Hippoglossus stenolepis (Pacific halibut) ]

Gene ID: 118103351, updated on 8-May-2024

Summary

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Gene symbol
mgat5
Gene description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
Locus tag
HST_G00227920
See related
EnsemblRapid:ENSHSTG00010008361
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippoglossus stenolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Hippoglossus
Orthologs
human zebrafish all
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Genomic context

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See mgat5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
17
Annotation release Status Assembly Chr Location
101 current HSTE1.2 (GCF_022539355.2) 24 NC_061506.1 (3865325..3936017, complement)
100 previous assembly IPHC_HiSten_1.0 (GCF_013339905.1) 24 NC_048950.1 (3873112..3944200, complement)

Chromosome 24 - NC_061506.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 163 Neighboring gene cyclin T2b Neighboring gene chloride intracellular channel 5a Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippoglossus stenolepis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSTE1.2 Primary Assembly

Genomic

  1. NC_061506.1 Reference HSTE1.2 Primary Assembly

    Range
    3865325..3936017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035150199.2 → XP_035006090.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A isoform X1

    Related
    ENSHSTP00010018209.1, ENSHSTT00010020337.1
    Conserved Domains (2) summary
    pfam15027
    Location:5 → 138
    DUF4525; Domain of unknown function (DUF4525)
    pfam15024
    Location:172 → 726
    Glyco_transf_18; Glycosyltransferase family 18

  2. XM_035150200.2 → XP_035006091.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A isoform X2

    Conserved Domains (2) summary
    pfam15027
    Location:5 → 138
    DUF4525; Domain of unknown function (DUF4525)
    pfam15024
    Location:172 → 598
    Glyco_transf_18; Glycosyltransferase family 18
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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